Projects

GraB-sampler is the optimal permutation-based SGD data sampler for PyTorch

ELBA is the state-of-the-art distributed-memory parallel algorithm for overlap detection and layout simplification steps of De Novo genome assembly. We introduce 3 GPU schedulers for ELBA to accommodate multiple MPI processes and multiple GPUs.

NoteAid Epic is a patient-oriented web application that helps patients read their doctor notes.

NoteAid is a BioNLP system that automatically recognizes medical concepts and translates medical jargon into patient-oriented lay language.

3D Part Segmentation on ShapeNet-Part

Evaluate effects of different kind of prior knowledge in causal structure learning from data

A simplified drug discovery pipeline